Ders: Moleküler evrimde birleşme (coalescence) modelleri ve filocoğrafya

İçerik: Coalescent modellerin populasyon genetigi ve tarihsel filocoğrafya kapsaminda kullanimi.

Ders notları: Bu LİNKTEN erişebilirsiniz. Ayrıca uygulama dersi için bu LİNKE bakın.

Temel Kaynak:

• Wakeley, J. 2009. Coalescent theory: An introduction. Roberts & Company Publishers.

Ek Kaynaklar

• Bloomquist, E. W., Lemey, P. & Suchard, M. A. 2010. Three roads diverged? Routes to phylogeographic inference. Trends in Ecology & Evolution 25: 626-632.
• Cutter, A. D. 2013. Integrating Phylogenetics, Phylogeography and Population Genetics Through Genomes and Evolutionary Theory. Molecular Phylogenetics and Evolution.
• Edwards, S. V. & Beerli, P. 2000. Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution 54: 1839-1854.
• Hey, J. & Nielsen, R. 2004. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167: 747.
• Hudson, R. R. 1990. Gene genealogies and the coalescent process. Oxford surveys in evolutionary biology 7: 44.
• Knowles, L. L. 2009. Statistical phylogeography. Annual Review of Ecology, Evolution, and Systematics 40: 593-612.
• Kuhner, M. K. 2009. Coalescent genealogy samplers: windows into population history. Trends in Ecology & Evolution 24: 86-93.
• Nielsen, R. & Beaumont, M. A. 2009. Statistical inferences in phylogeography. Molecular Ecology 18: 1034-1047.
• Rosenberg, N. A. & Nordborg, M. 2002. Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. Nature Reviews Genetics 3: 380-390.
• Wakeley, J. 2003. Inferences about the structure and history of populations: coalescents and intraspecific phylogeography. The evolution of population biology: 193–215.
• Wakeley, J. 2010. Natural selection and coalescent theory. Evolution since Darwin: the first 150: 119-149.